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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs11723261 1 rs11729365 chr4:272524 ZNF718 chr4:53272-156488:+ 0.35 7.38 3.13E-13 Immune response to smallpox vaccine (IL-6)
BRCA cis rs1364989 1 rs11731017 chr4:55007537 FIP1L1 chr4:54243820-54326102:+ -0.16 -3.42 0.000656 Lupus nephritis in systemic lupus erythematosus
BRCA cis rs1364989 1 rs11731060 chr4:55007690 FIP1L1 chr4:54243820-54326102:+ -0.16 -3.42 0.000656 Lupus nephritis in systemic lupus erythematosus
BRCA cis rs76419734 1 rs11731386 chr4:106600338 INTS12 chr4:106603787-106629881:- -0.28 -3.47 0.000532 Post bronchodilator FEV1
BRCA cis rs867186 1 rs117316403 chr20:33693175 MMP24 chr20:33814539-33864804:+ -0.21 -3.74 0.000196 Anticoagulant levels;D-dimer levels;Protein C levels;Factor VII levels;Hemostatic factors and hematological phenotypes
BRCA cis rs867186 1 rs117316403 chr20:33693175 PROCR chr20:33758727-33765164:+ -0.23 -4.78 2.04E-6 Anticoagulant levels;D-dimer levels;Protein C levels;Factor VII levels;Hemostatic factors and hematological phenotypes
BRCA cis rs76419734 1 rs11731714 chr4:106675946 INTS12 chr4:106603787-106629881:- -0.31 -3.82 0.00014 Post bronchodilator FEV1
BRCA cis rs1853207 1 rs117317596 chr10:96573396 C10orf129 chr10:96953957-96988685:+ 0.33 5.42 7.28E-8 Blood metabolite levels
BRCA cis rs76419734 1 rs11732298 chr4:106701679 INTS12 chr4:106603787-106629881:- 0.28 3.47 0.000544 Post bronchodilator FEV1
BRCA cis rs76419734 1 rs11733124 chr4:106677541 INTS12 chr4:106603787-106629881:- -0.31 -3.82 0.00014 Post bronchodilator FEV1
BRCA cis rs76419734 1 rs11733223 chr4:106765525 INTS12 chr4:106603787-106629881:- 0.26 3.54 0.000422 Post bronchodilator FEV1
BRCA cis rs11733284 1 rs11733284 chr4:48028097 CNGA1 chr4:47937996-48018610:- 0.22 7.6 6.55E-14 Renal underexcretion gout;Gout
BRCA cis rs11733284 1 rs11733284 chr4:48028097 NIPAL1 chr4:48018791-48039078:+ 0.11 3.55 0.000409 Renal underexcretion gout;Gout
BRCA cis rs76419734 1 rs11733287 chr4:106705339 INTS12 chr4:106603787-106629881:- -0.3 -3.69 0.000237 Post bronchodilator FEV1
BRCA cis rs2412488 1 rs11734039 chr4:54264428 SCFD2 chr4:53739152-54232242:- 0.13 3.38 0.000748 DNA methylation (variation)